PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020341.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 192aa    MW: 19581.4 Da    PI: 10.9125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020341.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-093282155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                +r+a  e Er RR+++   ++eL  llP +     ++   a iLe+A+ Y+  Lq
  Do020341.1 32 QRQAMVETERARRRHMSRLYAELGALLPDL----PPRAHRARILEEAIAYVGVLQ 82
                6899999**********************6....389*************98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-112991IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-103090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-63182No hitNo description
PROSITE profilePS5088811.9033181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-63282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-63787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.032128192IPR002912ACT domain
SuperFamilySSF550215.83E-5135174No hitNo description
CDDcd021160.00818136165No hitNo description
Gene3DG3DSA:3.30.70.2601.0E-4136182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAEEHPLALS LAAKTKGSPA GTTTVASAPP EQRQAMVETE RARRRHMSRL YAELGALLPD  60
LPPRAHRARI LEEAIAYVGV LQGTVAKLEA HGAFAGAGRR TTADGGGAAG AGTGAAELLA  120
ARKASCFAAR LPASRRPGAL TRVLEVLRRH GVHVLAATVT SNGGEATVTV TTAAVAPTVV  180
EGIKADISSS IA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620183.13e-24PREDICTED: uncharacterized protein LOC107278004
TrEMBLK3XRF26e-78K3XRF2_SETIT; Uncharacterized protein
STRINGSi004494m2e-77(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91411931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-10bHLH family protein